Publications

The CONcISE consortium and its DCs are committed to the early publishing and sharing of results, via open-access publications. The list below will be updated when further results and outcomes from the DC’s individual research projects are published.

Scientific Publications

  • Tobon-Maya, H., Zapata-Valencia, S. I., Obando, M., Lucka, F., Tajahuerce, E., & Lancis, J. (2026). Statistical compressive sensing method for Hadamard-based single-pixel microscopy supported by kernel density estimators. Advanced Imaging, 2, 1. http://dx.doi.org/10.3788/AI.2025.10001
  • Tobón-Maya, H., Willstatter, L., Zapata-Valencia, S. I., Bonora, S., Tajahuerce, E., & Lancis, J. (2025). Hadamard based single-pixel microscopy using sensor-less adaptive optics supported by multi-actuator adaptive lens. Nature Communications, 16(1), 10933. https://doi.org/10.1038/s41467-025-65940-4
  • Szydlo Shein, G., Bannone, E., Seidlitz, S., Hassouna, M., Baratelli, L., Pardo, A., Lecler, S., Triponez, F., Chand, M., Gioux, S., Maier-Hein, L., & Diana, M. (2025). Surgical optomics: a new science towards surgical precision. npj Gut and Liver, 2(1), 23. https://doi.org/10.1038/s44355-025-00035-x
  • Simoni, F., Tudosie, S. C., Varakkoth, S., Gandolfi, V., Arridge, S., Farina, A., & D’Andrea, C. (2026). Computational 3D multispectral fluorescence lifetime microscopy. Optics Express, 34(5), 8195-8207. https://doi.org/10.1364/OE.570525
  • Rahaman, J., Mozumder, M., Farina, A., & Tarvainen, T. (2025). Spatial and temporal modulation in time-domain diffuse optical tomography. Optics Continuum, 4(11), 2646-2663. https://doi.org/10.1364/OPTCON.568413
  • Zapata-Valencia, S. I., Tobon-Maya, H., D’Andrea, C., Lancis, J., & Tajahuerce, E. (2025). High-speed hyperspectral single-pixel microscopy via line-scan detection with data fusion-based enhanced resolution. In Communications Engineering. Nature Publishing Group UK. https://doi.org/10.1038/s44172-026-00693-6
  • Zapata-Valencia, S. I., Tobon-Maya, H., Matoba, O., Lancis, J., & Tajahuerce, E. (2025). Quantitative phase imaging in Hadamard-based active single-pixel microscopy by the motionless transport of intensity equation. Optics Letters, 50(13), 4478-4481. https://doi.org/10.1364/OL.566044
  • Zapata-Valencia, S. I., Tobón-Maya, H., Ordoñez, L., Farina, A., Lancis, J., & Tajahuerce, E. (2025). Design, assembly, alignment and application of a versatile, open-source, single-pixel microscope. Scientific Reports, 15(1), 17802. https://doi.org/10.1038/s41598-025-03125-1
  • Tobon-Maya, H., Zapata-Valencia, S. I., Willstatter, L., Bonora, S., Farina, A., Lancis, J., & Tajahuerce, E. (2025). Autofocusing method for active Hadamard single-pixel microscopy using gradient descent algorithms. Optics and Lasers in Engineering, 185, 108699. https://doi.org/10.1016/j.optlaseng.2024.108699

Conference Proceedings

  • Obando, M., Valencia-Zapata, S. I., Willstatter, L., Maya, H. T., Tarvainen, T., Bonora, S., Lancis, J., Tajahuerce, E., & Lucka, F. (2025, August). SMART-SPI: Towards an Integrated Framework for Advanced Computational Single-Pixel Imaging Systems. In Computational Optical Sensing and Imaging (pp. CW1B-3). Optica Publishing Group. https://doi.org/10.1364/COSI.2025.CW1B.3
  • Tudosie, S. C., Denker, A., Kereta, Z., & Arridge, S. (2025). Learning binary sampling patterns for single-pixel imaging using bilevel optimisation. arXiv preprint arXiv:2508.19068. https://doi.org/10.48550/arXiv.2508.19068
  • Tobón-Maya, H., Valencia, S. Z., Ordoñez, L., Tajahuerce-Romera, E., & Lancis-Saez, J. (2025, August). Design and implementation of a dual-mode single-pixel microscope for biological imaging using both visible and IR light. In Optical Methods for Inspection, Characterization, and Imaging of Biomaterials VII (Vol. 13571, pp. 11-15). SPIE. https://doi.org/10.1117/12.3066463
  • Zapata-Valencia, S. I., Tobon-Maya, H., Matoba, O., Lancis, J., & Tajahuerce, E. (2025, August). Quantitative phase single-pixel microscopy for biological sample imaging under low-power conditions. In Optical Methods for Inspection, Characterization, and Imaging of Biomaterials VII (Vol. 13571, pp. 197-199). SPIE. https://doi.org/10.1117/12.3065970
  • Tobón-Maya, H., Zapata-Valencia, S. I., Willstatter, L., Bonora, S., Farina, A., Lancis, J., & Tajahuerce, E. (2024, July). Reconstructionless autofocus method for Hadamard-based single-pixel microscopy. In Optica Imaging Congress 2024 (3D, AOMS, COSI, ISA, pcAOP), Technical Digest Series (Optica Publishing Group, 2024), paper OW1F.5. https://doi.org/10.1364/AOPT.2024.OW1F.5
  • Rosses, J., Torres, S., Pérez-Milán, P., & Cascante, J. (2024, October). Simulation-Based Process for Characterization of Hexagonal Photonic Crystal Fibers used in Supercontinuum Generation. In  Laser Congress 2024 (ASSL, LAC, LS&C) , Technical Digest Series (Optica Publishing Group, 2024), paper JTu2A.28. https://doi.org/10.1364/ASSL.2024.JTu2A.28

Datasets

  • Zapata-Valencia, S. I., & Tobon-Maya, H. (2026). Dataset and reconstruction pipeline for Hadamard‑based single‑pixel imaging [Data set]. Zenodo. https://doi.org/10.5281/zenodo.18412991
  • Rahaman, J. (2025). Spatial and temporal modulation in time-domain diffuse optical tomography: Dataset and MATLAB Code for Visualization [Data set]. In Spatial and temporal modulation in time-domain diffuse optical tomography (Version v1.0, Vol. 4, Issue 11, pp. 2646–2663). Zenodo. https://doi.org/10.5281/zenodo.15462556
  • Simoni, F., Tudosie, S. C., Varakkoth, S., Gandolfi, V., Arridge, S., Farina, A., & D’Andrea, C. (2025). 3D Multispectral Lifetime Fluorescence Microscopy Datasets [Data set]. Zenodo. https://doi.org/10.5281/zenodo.15496000

Reports

CONcISE continuously reports its results and progress to the European Commission. Some of these reports (called “Deliverables”) are public and are made available for download here.

*  Submitted deliverables will be made available for download once accepted by the European Commission